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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "spAbundance" in publications use:'
type: software
license: GPL-3.0-or-later
title: 'spAbundance: Univariate and Multivariate Spatial Modeling of Species Abundance'
version: 0.2.1
identifiers:
- type: doi
  value: 10.32614/CRAN.package.spAbundance
- type: url
  value: https://groups.google.com/g/spocc-spabund-users
abstract: Fits single-species (univariate) and multi-species (multivariate) non-spatial
  and spatial abundance models in a Bayesian framework using Markov Chain Monte Carlo
  (MCMC). Spatial models are fit using Nearest Neighbor Gaussian Processes (NNGPs).
  Details on NNGP models are given in Datta, Banerjee, Finley, and Gelfand (2016)
  <https://doi.org/10.1080/01621459.2015.1044091> and Finley, Datta, and Banerjee
  (2022) <https://doi.org/10.18637/jss.v103.i05>. Fits single-species and multi-species
  spatial and non-spatial versions of generalized linear mixed models (Gaussian, Poisson,
  Negative Binomial), N-mixture models (Royle 2004 <https://doi.org/10.1111/j.0006-341X.2004.00142.x>)
  and hierarchical distance sampling models (Royle, Dawson, Bates (2004) <https://doi.org/10.1890/03-3127>).
  Multi-species spatial models are fit using a spatial factor modeling approach with
  NNGPs for computational efficiency.
authors:
- family-names: Doser
  given-names: Jeffrey
  email: jwdoser@ncsu.edu
- family-names: Finley
  given-names: Andrew
preferred-citation:
  type: article
  title: 'spAbundance: An R package for univariate and multivariate spatially-explicit
    abundance models'
  authors:
  - family-names: Doser
    given-names: Jeffrey W.
  - family-names: Finley
    given-names: Andrew O.
  - family-names: Kéry
    given-names: Marc
  - family-names: Zipkin
    given-names: Elise F.
  journal: Methods in Ecology and Evolution
  year: '2024'
  volume: '15'
  url: https://doi.org/10.1111/2041-210X.14332
  start: 1024-1033
repository: https://biodiverse.r-universe.dev
repository-code: https://github.com/biodiverse/spAbundance
commit: a49ef64dab6c5f1c4f75d2d48c8498d79b1d5b9e
url: https://www.doserlab.com/files/spabundance-web
contact:
- family-names: Doser
  given-names: Jeffrey
  email: jwdoser@ncsu.edu
references:
- type: article
  title: Joint species distribution models with imperfect detection for high-dimensional
    spatial data
  authors:
  - family-names: Doser
    given-names: Jeffrey W.
  - family-names: Finley
    given-names: Andrew O.
  - family-names: Banerjee
    given-names: Sudipto
  journal: Ecology
  year: '2023'
  url: https://doi.org/10.1002/ecy.4137
  start: e4137